PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003761.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 1076aa    MW: 121325 Da    PI: 9.7178
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003761.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.82e-19409506290
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwe 77 
                              fY eYA+  GF+vr s++k+  r+g i++r +vCs++g r  +k+            +k+rr+r+++r++C+ k+ ++k+++g+++
  Itr_sc003761.1_g00002.1 409 FYMEYASAGGFDVRLSTMKRD-RDGAIIMRYLVCSRQGMRGGDKHIvnhdgeaggaINKQRRRRVSNRVECNEKICIRKDHTGEFV 493
                              9***************99998.8999**************998887999******9999*************************** PP

                     FAR1  78 vtkleleHnHela 90 
                              v+ ++ eHnH+l+
  Itr_sc003761.1_g00002.1 494 VSIFVAEHNHSLC 506
                              ***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-17409506IPR004330FAR1 DNA binding domain
PfamPF105515.6E-31627719IPR018289MULE transposase domain
PROSITE profilePS509669.681908944IPR007527Zinc finger, SWIM-type
SMARTSM005750.0015919946IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1076 aa     Download sequence    Send to blast
MIPVDMTHPA EVLAPSVAAP ATHGVDPPAM DAVRAQSSEP GNPVHRGDEP NHRDRSPITG  60
TDSPITGAEV QSQGRPQRLH YPTRVPRKSN FPHTESDSAQ NTKKGSRLQR SDHNTPTFHP  120
TEHKTRRHRL VLTPNGERSS AAAIRHLSPP SLCLLEAGVA ARKRVTEEPA PQEPTVAVAI  180
RSTSEVKAAT TLILPFVVGQ RRRRGVRSPH AAGEREMPPF LSVALHRRRR RVTLEATIAA  240
DSELTKRRPL ALPFDRGEEP GHRSRSSLQL RHRPTPTLPG GPSRSLPEEK ACSFAAGREE  300
RGGGEASCHA AIPCLHHGRR HLELMLILCE REGEIRNRRE GRETGDGRRI ILWLLLIRVD  360
AMGIPGVSSS QYTMSVTFRA DQSWTPTVDA KLLPEVGQHF STSAQGVTFY MEYASAGGFD  420
VRLSTMKRDR DGAIIMRYLV CSRQGMRGGD KHIVNHDGEA GGAINKQRRR RVSNRVECNE  480
KICIRKDHTG EFVVSIFVAE HNHSLCIEAL KVFMRGKRKL DAAQQSFIAN CIKSNIGMSK  540
GFRLYKEGAG AFANVGATSM EFHNFKRDLQ AYVAGGDGEM IIKKFSQRRE VCGDFVFDYH  600
LDTDNQLAPL FWADTMGRLD YSLFGDVISF DATYGTNRYR LVFVPFTGVN NHKRCVTFAA  660
GLLTKENTES YMWLLEKFKS RTGHNPRCVV TDQDPAIMIA IERVLPESRH RFCMWHIMTK  720
VSEKIGPELA RDEVFRRRLN GIVWSDRMSI DEFEVQWHVL MEEYRLTDHP WLCKLYAERS  780
FWIPAFFTDL PMSGLLRTTS RSEAQNNVFG QFTRPHSSLV EFYVQFESVL EAQRHKQSKM  840
NVECEEYLPE FKTPLSLERH VAKLFTITIF YELQHKIVAR CFYCRVVGVH EEQGVIRYDI  900
KGEDNTLFRV ERGTDGFSAM CSCQMFHQLG LVCRHMFLVF KDARLDALPT QYVVGRWCKQ  960
RNVGTGDLGT NGLWSEIKAC AVLVGNNSGR MSRMVQVLQE LRSEFSSGGT NASNGRSKAP  1020
AQAKNKGSGK RIKSKRELAI EASQLGGRKC HMCDRREGHD ARNCPFKGCL GRLNDR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1721446e-41GU172144.1 Ipomoea batatas microsatellite Stv_Ipb_2587 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-83FAR1-related sequence 5